TOPALi v2 Screenshots
The main TOPALi interface, showing alignment handling and overview windows:
 
Monitoring and tracking the progress of multiple concurrent job submissions (running both locally and remotely on a cluster):
 
Graphical results from a Hidden Markov Model (HMM) recombination detection run:
 
Various phylogenetic trees that have been generated within TOPALi:
 
Determinging the inputs and settings for a new HMM job submission:
 
Graphical and tabular results from a model selection run: