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Legal information (licenses)
Projects
Project files
Overview
Creating a new project
Opening an
existing project
Saving a project
Working with alignments
Displaying alignments
Summary information
Phylogenetic
overviews
Editing alignments
Reordering sequences
Renaming sequences
Replacing characters
Removing gaps
Restoring gaps
Removing
partition-sequences
Display settings
Running analysis jobs
Analysis
settings
Selecting
sequences
PDM
Basic settings
Advanced settings
Bambe settings
Running PDM
HMM
Basic settings
Topology structure
Model settings
Run settings
Running HMM
DSS
Basic settings
Advanced settings
Running DSS
Working with analysis results
Graphs
PDM results
HMM results
DSS results
Comparing graphs
Adjusting settings
Saving graphs
Working with partitions
Creating partitions
Automatically
partitioning
Viewing partitions
Selecting partitions
Exporting partitions
Removing partitions
Creating Phylogenetic trees
Selecting the data
Creating the tree
Viewing trees
Grouping clusters
Saving trees
Predicting the
mosaic structure
Running the
wizard
Viewing the
results
Saving
Gradient shading
Selecting colours
Generating reports
Selecting the result
set
Creating the report
Miscellaneous
Printing
Checking for updates